Brief intro to MATLAB (pdf)

Lab 1 (pdf)

Lab 2 (pdf)

Lab 3 (pdf)

Lab 4 (pdf)

MATLAB files

• seqdata.mat
• informative.m
• primatedata.m
• compseq.m
• distH.m
• hamming.m
• nj.m
• markovJC.m
• seqgen.m
• distJC.m
• distJCarray.m
• mutatef.m
• flhivdata.m

• dnapars.exe
• dnaml.exe
• dnadist.exe
• neighbor.exe
• drawtree.exe
• drawgram.exe
• font1
• primates.phy
• hominoids.phy
• hominoids2.phy
• flHIV.phy

• flHIV.nex

(Most files and problems are from Allman and Rhodes)

Last modified: January 22, 2006